[Genome] Custom plots

[Heather Trumbower]

Anton:

We could host your data at
http://genome.ucsc.edu/goldenPath/customTracks/custTracks.html.
Would this work for you?   Note that we don't implement access control at 
this location.

I'll check with my colleagues regarding other possible options.

Heather Trumbower
UCSC Genome Bioinformatics Group


On Fri, 6 Apr 2007, Anton Valouev wrote:

> Dear Heather,
> we are in the process of compiling a set of custom tracks for
> genome-wide C.elegans nucleosome positioning derived using
> next generation ultra high throughput sequencing technologies.
> As such, I often have to upload different tracks into your browser
> and share them with my collaborators. Each chromosome
> usually has 6-8 tracks associated with it each approximatedly 50Mb.
> This works fairly well for us, the only inconvenient part about that
> is that when sessions expire, and I have to upload all the tracks again
> and that takes a very long time. Is there any way to assign non-expiring
> session id to us so that we wouldn't have to reload tracks every other
> day? We plan to later share these tracks as a public resource for
> genomics community.
>
> Many thanks for your help.
> Best, Anton.
>
> Heather Trumbower wrote:
>> On Thu, 22 Mar 2007, Heather Trumbower wrote:
>> 
>>> Anton:
>>> 
>>> We currently have support for custom WIG files, but not for custom MAF 
>>> files. The documentation for custom WIG files is available at
>>> http://genome.ucsc.edu/goldenPath/help/wiggle.html.
>>> 
>>> I thought I would also mention, if you are able to configure our existing
>>> Conservation tracks to suit your needs, you can export the image as PDF or 
>>> postscript.   We support a number of different configuration options for
>>> Conservation tracks.
>>> 
>>> I hope this helps, let us know if you have further questions.
>>> 
>>> Heather Trumbower
>>> UCSC Genome Bioinformatics Group
>>> 
>>> 
>>> On Thu, 22 Mar 2007, Anton Valouev wrote:
>>> 
>>>> Hello,
>>>> I am trying to display a custom plot on the genome browser,
>>>> a plot like a conservation score that is a part of your browser.
>>>> Is there any way to compile a custom track to display a plot
>>>> for each position of the genome?
>>>> 
>>>> Thanks in advance.
>>>> Very best, Anton.
>>>> _______________________________________________
>>>> Genome maillist  -  Genome at soe.ucsc.edu
>>>> http://www.soe.ucsc.edu/mailman/listinfo/genome
>>>> 
>>> 
>> 
>