[Genome] downloads for Variation and Repeats tracks

[Dmitry]

Thank you Ann very much!

I never looked at the end of the page.
I thought that in the Annotation DB all tracks are stored by a chromosome
number and never went beyond Chr1.
Silly me :-)

Thank you again

Dmitry

-----Original Message-----
From: Ann Zweig [mailto:ann at soe.ucsc.edu] 
Sent: Thursday, April 05, 2007 7:35 PM
To: Dmitry
Cc: genome at soe.ucsc.edu
Subject: Re: [Genome] downloads for Variation and Repeats tracks

Hello Dmitry,

	You can download the MySQL tables underlying the data from our
download server. 
  Follow the 'Downloads' link from the blue navigation bar on the left side
of 
the home page.  From there, press Human, then under hg18 (or the assembly
you 
are interested in) press Annotation Database.  This directory contains a
file 
for each table in the database.

	You will need to determine the name of the table that supports the
track you 
are interested in. To do this in the genome browser, simply press the
hyperlink 
for the name of the track in the track controls under the display.  In the
URL 
on this page, you will see (usually at the very end), "g=abc".  The 'abc' is
the 
name of the table that underlies this track.  This is the table you will
want to 
download from the Download server.

	For example, for the SNP track in the hg18 browser, the table name
is snp126.


Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu


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Dmitry wrote:
> Hi,
>  
> Where can I find and download psl files for the Variation and Repeats
> tracks?
>  
> Thank you
>  
> Dmitry
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome