[Genome] liftOver utility source code

[Hiram Clawson]

Good Afternoon Mayank:

You can obtain the source tree either via CVS:
	http://genome.ucsc.edu/admin/cvs.html
or a zip file:
	http://hgdownload.cse.ucsc.edu/admin/jksrc.zip

Please note the build instructions:
	http://genome.ucsc.edu/admin/jk-install.html

All of the kent utilities output their usage message and command
line options by running them with no arguments.

--Hiram

On 2006 Sep 18, , at 12:01 PM, Mayank Maheshwary wrote:

> Hi,
>
> My name is Mayank and I work at the Huntsman Cancer Institute at the 
> University of Utah. I was wondering if I can get the source code for 
> the liftOver utility. The Source Downloads page 
> (http://hgdownload.cse.ucsc.edu/downloads.html#source_downloads) only 
> provides the executables. I noticed that there are danRer2ToDanRer3 
> and danRer3ToDanRer4 over.chain files; is it possible to get a 
> danRer2ToDanRer4 over.chain file? Also, is there any documentation 
> regarding how to pass the 'over.chain' files to the liftOver 
> executable and the various command line options?
>
> Thanks.
>
> Mayank.
> --
> Mayank Maheshwary
> Huntsman Cancer Institute
> University of Utah