October 2006 Archives by author

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Starting: Sun Oct 1 04:36:41 PST 2006
Ending: Tue Oct 31 21:51:18 PST 2006
Messages: 264

• [Genome] Multiple Alignment files for mammals only   DENARIER Eric 123382
• [Genome] chicken genome - missing MIRs   Gyoergy Abrusan
• [Genome] rmsk annotation   Adam Auton
• [Genome] rmsk annotation   Adam Auton
• [Genome] encodeStanfordMeth data   Adam Auton
• [Genome] D. pseudoobscura annotations   Doris Bachtrog
• [Genome] BLAT short sequence queries ( 12mer to 30mer )   Galt Barber
• [Genome] nib utilities?   Galt Barber
• [Genome] nib utilities?   Galt Barber
• [Genome] dead link for BLAT download (executables)   Galt Barber
• [Genome] blat: minIdentity option not working?   Galt Barber
• [Genome] Browser gives strange error message   Jeltje van Baren
• [Genome] problem with custom tracks   Gabor Bartha
• [Genome] listing genes in a range of genome locations   Katrina Bell
• [Genome] LiftOver tool from hg17 to hg18   Hila Benjamin
• [Genome] GenScan UCSC track for the ENCODE regions   Axel E. Bernal
• [Genome] Standalone liftOver source   Adam Bernard
• [Genome] span size   Minou Bina
• [Genome] fly phenotypes   Sean Bradley
• [Genome] user tracks   Brown, Greg W
• [Genome] Adding a new genome (or genomes) to the public site   Roger Bumgarner
• [Genome] about SGP gene   Francisco Camara
• [Genome] help in locating the custom tracks submitted by Carroll et al.,   Edmund Chang
• [Genome] question about knownToPfam data   Tiger Chen
• [Genome] protein search using 3D structure information   Ginger Cheng
• [Genome] Custom tracks   Peter Chines
• [Genome] Custom tracks   Peter Chines
• [Genome] hgNear error   Davide Cittaro
• [Genome] nib utilities?   Davide Cittaro
• [Genome] nib utilities?   Davide Cittaro
• [Genome] custom tracks and secure http?   Davide Cittaro
• [Genome] custom tracks and secure http?   Davide Cittaro
• [Genome] GenScan UCSC track for the ENCODE regions   Hiram Clawson
• [Genome] Are all timestamps kept up to date?   Hiram Clawson
• [Genome] nib utilities?   Hiram Clawson
• [Genome] running in-house version of blat - Standalone BLAT v. 30   Hiram Clawson
• [Genome] 500 kb BACs?   Hiram Clawson
• [Genome] VIEAGRA   Mave Collyer
• [Genome] Browser Feature Suggestion: augmented 'move' control to support move-by-feature   Cook, Malcolm
• [Genome] Browser Feature Suggestion: augmented 'move' control to support move-by-feature   Cook, Malcolm
• [Genome] PanTro1/netHg16 file   Einat Covo
• [Genome] blat: same results with and without -q=rna   Adnan Derti
• [Genome] blat: minIdentity option not working?   Adnan Derti
• [Genome] Retrieve dbSNP entry from browser   Du, Lei
• [Genome] mysql query   Isabelle Dupanloup
• [Genome] Clear button   Elliott, Rosemary
• [Genome] human genome browser   PD Dr. rer. nat. Jeanette Erdmann
• [Genome] human hg18 alignments to chimpanzee panTro2   Erika
• [Genome] panTro2 quality files   Erika
• [Genome] Default to most recent assembly   Evans, Leonard (NIH/NIAID) [E]
• [Genome] GenScan UCSC track for the ENCODE regions   Paul Flicek
• [Genome] human vs mouse_lemur pairwise alignments   Vincenzo Forgetta
• [Genome] liftOVER input format   Freed, Ellen
• [Genome] genomic sequence marker   Baojin Fu
• [Genome] Q: Missing mRNA data in Human Browser?   Ulrike Gausmann
• [Genome] Stem cell methylation data?   Joseph Gray
• [Genome] sharing Custom annotation track   Deepak Grover
• [Genome] Where is the xenoRefSeqAli table for mouse ?   Zhiping Gu
• [Genome] Where is the xenoRefSeqAli table for mouse ?   Zhiping Gu
• [Genome] self chain, difference between versions   Maximilian Haeussler
• [Genome] (no subject)   Hailong.Meng.contractor at pmusa.com
• [Genome] annotation from CDS and mRNA coordinates   Rachel Harte
• [Genome] annotation from CDS and mRNA coordinates (fwd)   Rachel Harte
• [Genome] Gene Sorter   Rachel Harte
• [Genome] Affy U133 probe mappings missing?   Rachel Harte
• [Genome] obtaining multiz17way alignments batch wise   Rachel Harte
• [Genome] CpG islands interscting with Unigene Cluster ID Gene List   Rachel Harte
• [Genome] looking for bac clone   Rachel Harte
• [Genome] panTro2 quality files   Rachel Harte
• [Genome] question about knownGene   Rachel Harte
• [Genome] question about knownToPfam data   Rachel Harte
• [Genome] Where to find Perlegen file for hg17?   Rachel Harte
• [Genome] order genome bac clone   Rachel Harte
• [Genome] genomic sequence marker   Rachel Harte
• [Genome] Standalone liftOver source   Rachel Harte
• [Genome] genomic sequence marker   Rachel Harte
• [Genome] Retrieve dbSNP entry from browser   Rachel Harte
• [Genome] human genetic diversity data   Rachel Harte
• [Genome] Default to most recent assembly   Rachel Harte
• [Genome] Default to most recent assembly   Rachel Harte
• [Genome] Blat finds NO match for genomic DNA   Rachel Harte
• [Genome] LiftOver tool from hg17 to hg18   Rachel Harte
• [Genome] D. pseudoobscura annotations   Rachel Harte
• [Genome] sharing Custom annotation track   Rachel Harte
• [Genome] small RNAs, how to check they are intronic and intergenic ?   Rachel Harte
• [Genome] Genome assembly lists autoupdate in Safari but not in FireFox 2   Rachel Harte
• [Genome] short results when running my own blat server   Alex Holman
• [Genome] Are all timestamps kept up to date?   Fan Hsu
• [Genome] getting known gene description   Fan Hsu
• [Genome] Human SNURF (15q11)   Fan Hsu
• [Genome] links from UCSC genome Browser to Stanford SOURCEincorrect?   Fan Hsu
• [Genome] ftp download hg18 data   Sufen Hu
• [Genome] ftp download hg18 data   Sufen Hu
• [Genome] looking for bac clone   Xiaodong Huang
• [Genome] liftOver command line usage   David Johnson
• [Genome] Custom Tracks tool   Seth Johnson
• [Genome] Blat finds NO match for genomic DNA   Ulas Karaoz
• [Genome] Query   Donna Karolchik
• [Genome] CanFam2 to RheMac2   Donna Karolchik
• [Genome] Where to find files for HapMap & Per legen tracks on hg17?   Donna Karolchik
• [Genome] blat: minIdentity option not working?   Donna Karolchik
• [Genome] dead link for BLAT download (executables)   Donna Karolchik
• [Genome] help to find data   Donna Karolchik
• [Genome] Out files   Donna Karolchik
• [Genome] custom tracks and secure http?   Donna Karolchik
• [Genome] BAC clone   Donna Karolchik
• [Genome] Mapping the 32K BAC rearray collection   Donna Karolchik
• [Genome] Adding a new genome (or genomes) to the public site   Donna Karolchik
• [Genome] GenScan UCSC track for the ENCODE regions   Jim Kent
• [Genome] GenScan UCSC track for the ENCODE regions   Jim Kent
• [Genome] Visualization of custom track data on several chromosomes at once?   Robert Kuhn
• [Genome] Restriction enzyme sites   Robert Kuhn
• [Genome] Why I cannot connect to the mySQL database today?   Robert Kuhn
• [Genome] chicken genome - missing MIRs   Robert Kuhn
• [Genome] Gene Sorter   Vinayak Kulkarni
• [Genome] Too many custom tracks   Julien Lagarde
• [Genome] Assembly from fragments data   Lancaster, O.
• [Genome] conserved TFBS sites for hg18   Michal Lapidot
• [Genome] Large batch BLAT queries   Jill Larsen
• [Genome] Is there a frameshift index for table xenoRefGene of rheMac2   Fan-Kai Lin
• [Genome] Encode Recombination Rates   Alexandra Lopes
• [Genome] Mapping the 32K BAC rearray collection   Alan Mackay
• [Genome] BLAT short sequence queries ( 12mer to 30mer )   John Major
• [Genome] Affy U133 probe mappings missing?   John Major
• [Genome] BLAT short sequence queries ( 12mer to 30mer )   John Major
• [Genome] Visualization of custom track data on several chromosomes at once?   John Major
• [Genome] BLAT short sequence queries ( 12mer to 30mer )   John Major
• [Genome] Conservation   Sajid Malik
• [Genome] human genetic diversity data   Janina Matuszeski
• [Genome] dead link for BLAT download (executables)   Ryan Morin
• [Genome] (no subject)   Muse, Ginger (NIH/NIEHS) [E]
• [Genome] FW:   Muse, Ginger (NIH/NIEHS) [E]
• [Genome] error   Pavla Navratilova
• [Genome] real genes   Zafar Nawaz
• [Genome] Promoter multiz alignment files (upstream1000.maf)   Eric Lyman Van Nostrand
• [Genome] links from UCSC genome Browser to Stanford SOURCE incorrect?   Dr Kevin O'Hare
• [Genome] running in-house version of blat - Standalone BLAT v. 30   Thomas Nordahl Petersen
• [Genome] Restriction enzyme sites   Kevin A. Peterson
• [Genome] BLAT   Viviana Piccolo
• [Genome] CpG islands interscting with Unigene Cluster ID Gene List   Carlos Plasencia
• [Genome] Gene Name to RefSeq ID   Nalini Polavarapu
• [Genome] obtaining multiz17way alignments batch wise   Robert Querfurth
• [Genome] Question   Sujana Raval
• [Genome] Are all timestamps kept up to date?   Resch, Alissa (NIH/NLM/NCBI) [F]
• [Genome] How to get DNA sequences from the table browser?   Brooke Rhead
• [Genome] annotation from CDS and mRNA coordinates   Brooke Rhead
• [Genome] (no subject)   Brooke Rhead
• [Genome] C. Elegans Information   Brooke Rhead
• [Genome] (no subject)   Brooke Rhead
• [Genome] use of Batch Coordinate Conversion (liftOver)   Brooke Rhead
• [Genome] Table   Brooke Rhead
• [Genome] spurious declaration lines in phastCons drosophila files?   Brooke Rhead
• [Genome] Question   Brooke Rhead
• [Genome] Conservation   Brooke Rhead
• [Genome] Clear button   Brooke Rhead
• [Genome] Conservation   Brooke Rhead
• [Genome] Mask Repeats   Brooke Rhead
• [Genome] Mask Repeats   Brooke Rhead
• [Genome] Gene Name to RefSeq ID   Brooke Rhead
• [Genome] rmsk annotation   Brooke Rhead
• [Genome] Q: Missing mRNA data in Human Browser?   Brooke Rhead
• [Genome] [Fwd: Re: find 5' and 3' regions. (fwd)]   Brooke Rhead
• [Genome] Getting a genomic sequence from a program   Brooke Rhead
• [Genome] [Fwd: Re: find 5' and 3' regions. (fwd)]   Brooke Rhead
• [Genome] Clear button   Brooke Rhead
• [Genome] Genome assembly lists autoupdate in Safari but not in FireFox 2   Gordon Robertson
• [Genome] Genome assembly lists autoupdate in Safari but not in FireFox 2   Gordon Robertson
• [Genome] Genome assembly lists autoupdate in Safari but not in FireFox 2   Gordon Robertson
• [Genome] Genome Digest, Vol 45, Issue 42   Gordon Robertson
• [Genome] human hg18 alignments to chimpanzee panTro2   Kate Rosenbloom
• [Genome] about "hg18.panTro2.all.chain.gz"   Kate Rosenbloom
• [Genome] problem with custom tracks   Kate Rosenbloom
• [Genome] Too many custom tracks   Kate Rosenbloom
• [Genome] FW:   Kate Rosenbloom
• [Genome] Custom Tracks tool   Kate Rosenbloom
• [Genome] Custom tracks   Kate Rosenbloom
• [Genome] Custom tracks   Kate Rosenbloom
• [Genome] encode histones   Kate Rosenbloom
• [Genome] Browser gives strange error message   Kate Rosenbloom
• [Genome] 500 kb BACs?   Katie Rudd
• [Genome] find 5' and 3' regions.   LIANHE SHAO
• [Genome] question about knownGene   Ying Sheng
• [Genome] Genome Browser- dbSNP Question   Sheth, Sonal
• [Genome] xenTro2 liftover and net files.   Cas Simons
• [Genome] Query   Maxine Singer
• [Genome] question for refFlat.txt in mm7   Kayla Smith
• [Genome] error   Kayla Smith
• [Genome] Exon array track for mar. 2006 assembly   Kayla Smith
• [Genome] BlastP scores for download?   Kayla Smith
• [Genome] user tracks   Kayla Smith
• [Genome] encodeStanfordMeth data   Kayla Smith
• [Genome] UCSC data download questions,   Vinodh Srinivasasainagendra
• [Genome] clone-based sequences in chimp browser   Ralf Sudbrak
• [Genome] spurious declaration lines in phastCons drosophila files?   Jan Szubert
• [Genome] Is there a frameshift index for table xenoRefGene of rheMac2   Archana Thakkapallayil
• [Genome] Assembly from fragments data   Archana Thakkapallayil
• [Genome] Promoter multiz alignment files (upstream1000.maf)   Archana Thakkapallayil
• [Genome] Promoter multiz alignment files (upstream1000.maf)   Archana Thakkapallayil
• [Genome] listing genes in a range of genome locations   Archana Thakkapallayil
• [Genome] Stem cell methylation data?   Archana Thakkapallayil
• [Genome] Genome Browser- dbSNP Question   Archana Thakkapallayil
• [Genome] Genome Browser- dbSNP Question   Archana Thakkapallayil
• [Genome] span size   Archana Thakkapallayil
• [Genome] problems in loading repeat masker to mysql   Archana Thakkapallayil
• [Genome] Human SNURF (15q11)   Karen Thatcher
• [Genome] Exon array track for mar. 2006 assembly   Kasper Thorsen
• [Genome] liftOver command line usage   Heather Trumbower
• [Genome] Clear button   Heather Trumbower
• [Genome] mysql query   Heather Trumbower
• [Genome] ftp download hg18 data   Heather Trumbower
• [Genome] Genome assembly lists autoupdate in Safari but not in FireFox 2   Heather Trumbower
• [Genome] Table   Chad B Walton
• [Genome] about "hg18.panTro2.all.chain.gz"   Jun Wang
• [Genome] about the reciprocal best chains between Mouse and Rat   Jun Wang
• [Genome] getting known gene description   Ting Wang
• [Genome] about SGP gene   Li Xiao
• [Genome] (no subject)   Shan Yang
• [Genome] Where to find files for HapMap & Per legen tracks on hg17?   Shan Yang
• [Genome] Where to find Perlegen file for hg17?   Shan Yang
• [Genome] order genome bac clone   Yu, Xiuping
• [Genome] Why I cannot connect to the mySQL database today?   Xiaoqing Zhang
• [Genome] listing genes in a range of genome locations   Yi Zhang
• [Genome] Multiple Alignment files for mammals only   Ann Zweig
• [Genome] conserved TFBS sites for hg18   Ann Zweig
• [Genome] Where is the xenoRefSeqAli table for mouse ?   Ann Zweig
• [Genome] blat: same results with and without -q=rna   Ann Zweig
• [Genome] Fw: Genome browser sticky session data.   Ann Zweig
• [Genome] GenScan UCSC track for the ENCODE regions   Ann Zweig
• [Genome] sorting the data I get by the order I need to get it   Ann Zweig
• [Genome] BLAT short sequence queries ( 12mer to 30mer )   Ann Zweig
• [Genome] liftOVER input format   Ann Zweig
• [Genome] Encode Recombination Rates   Ann Zweig
• [Genome] BLAT short sequence queries ( 12mer to 30mer )   Ann Zweig
• [Genome] liftOVER input format   Ann Zweig
• [Genome] self chain, difference between versions   Ann Zweig
• [Genome] fly phenotypes   Ann Zweig
• [Genome] xenTro2 liftover and net files.   Ann Zweig
• [Genome] BLAT   Ann Zweig
• [Genome] hgNear error   Ann Zweig
• [Genome] BAC clones   Ann Zweig
• [Genome] UCSC data download questions,   Ann Zweig
• [Genome] rmsk annotation   Ann Zweig
• [Genome] human genome browser   Ann Zweig
• [Genome] human vs mouse_lemur pairwise alignments   Ann Zweig
• [Genome] Downloading snp126 table   Ann Zweig
• [Genome] Browser Feature Suggestion: augmented 'move' control to support move-by-feature   Ann Zweig
• [Genome] real genes   Ann Zweig
• [Genome] Browser Feature Suggestion: augmented 'move' control to support move-by-feature   Ann Zweig
• [Genome] PanTro1/netHg16 file   Ann Zweig
• [Genome] clone-based sequences in chimp browser   Ann Zweig
• [Genome] Downloading snp126 table   alessandro.guffanti at tiscali.it
• [Genome] links from UCSC genome Browser to Stanford SOURCEincorrect?   array at genome
• [Genome] Getting a genomic sequence from a program   ferraria at marseille.fnclcc.fr
• [Genome] problems in loading repeat masker to mysql   fungazid fungazid
• [Genome] Large batch BLAT queries   hartera at soe.ucsc.edu
• [Genome] C. Elegans Information   jcumplido at comcast.net
• [Genome] question for refFlat.txt in mm7   xiangdong liu
• [Genome] use of Batch Coordinate Conversion (liftOver)   philippe.dessen at igr.fr
• [Genome] encode histones   polak at molgen.mpg.de
• [Genome] sorting the data I get by the order I need to get it   snaama84 at t2.technion.ac.il
• [Genome] annotation from CDS and mRNA coordinates   ram vinay
• [Genome] BAC clones   yziegler at uiuc.edu
• [Genome] BAC clone   yziegler at uiuc.edu
• [Genome] CanFam2 to RheMac2   zhaoshi

Last message date: Tue Oct 31 21:51:18 PST 2006
Archived on: Wed Nov 1 07:52:11 PST 2006

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