[Genome] D. pseudoobscura annotations

[Rachel Harte]

Hello Doris,

The reason that you can not find GA10866 on the Drosophila pseudoobscura 
Genome Browser is is that FlyBase is updated more often than we update 
this track on the Browser.  For dp3, it looks like we downloaded FlyBase 
genes (version 1.03) in January 2005. Typically, we download FlyBase Genes 
at the time that we create a Genome Browser for a new assembly and then 
the track is not updated after that for that assembly.

Please let us know if you have further questions.

Rachel

On Mon, 30 Oct 2006, Doris Bachtrog wrote:

> Hello,
>
> I was using the Drosophila pseudoobscura Annotation database. In the
> textfile "flyBaseGene.txt", several of the genes that are annotated
> as coding genes in flybase are missing (6 genes were missing from 52
> analyzed, i.e. about 10%).
>
> For example, gene GA10866 is annotated in flybase (in contig
> chrXR_group6 - from position 4551947-4556117), but is missing
> in the UCSC annotation. The two neighboring genes (GA20144 and
> GA16911) are annotated, both in the UCSC file and in flybase.
>
> Thanks a lot for your help,
>
> cheers,
> Doris
>
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome
>

-- 
Rachel Harte
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu