[Genome] D. pseudoobscura annotations

Doris Bachtrog dbachtrog at ucsd.edu
Mon Oct 30 10:31:26 PST 2006


Hello,

I was using the Drosophila pseudoobscura Annotation database. In the  
textfile "flyBaseGene.txt", several of the genes that are annotated  
as coding genes in flybase are missing (6 genes were missing from 52  
analyzed, i.e. about 10%).

For example, gene GA10866 is annotated in flybase (in contig  
chrXR_group6 - from position 4551947-4556117), but is missing
in the UCSC annotation. The two neighboring genes (GA20144 and  
GA16911) are annotated, both in the UCSC file and in flybase.

Thanks a lot for your help,

cheers,
Doris



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