[Genome] clone-based sequences in chimp browser

[Ann Zweig]

Hello Ralf,

	I'm not exactly sure what you're asking, but I'll give you some information and 
if it's not what you were looking for, then please feel free to write back with 
more details about what you need.

	We have two chimp browsers: panTro1 (Nov. 2003 based on NCBI Build 1 Version 
1), and panTro2 (Mar. 2006 based on Build 2 Version 1).

	In the panTro1 browser, we have a track of BAC End Pairs.  These BAC end reads 
are mapped to the genome sequence.  This track shows these mappings in cases 
where both ends could be mapped.  From this you could extract the reference 
sequence corresponding to the clone.  We also provide a direct link from the 
clone details page to the NCBI website where the clone sequences are stored. 
This may be what you are looking for.

	The panTro2 browser does not have a BAC End Pairs track.

	Be sure to let us know if this does not answer your question.

Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu





Ralf Sudbrak wrote:
> Hello,
> 
> is it possible to see with the chimp genome browser clone-based 
> sequences as well?
> 
> Best wishes
> 
> Ralf
>