[Genome] 500 kb BACs?
Hiram Clawson
hiram at soe.ucsc.edu
Mon Oct 23 10:26:38 PDT 2006
Good Morning Katie:
We have an error in this BAC track. Some of them as you have
discovered cover too much distance. We hope to fix this in the
near future.
--Hiram
Katie Rudd wrote:
> In the March 2006 assembly, there are some BACs that appear to be
> much larger than expected. For example, AC025983.3 (RP11-687M15)
> spans greater than 500 kb on the chromosome 19 browser view, but
> according to NCBI it is 173 kb in 35 unordered pieces. Several other
> BACs in the same region also span regions much larger than the
> average BAC insert size. There are no annotated segmental
> duplications in this region, so I can't imagine why these BACs would
> be assembled to cover such a large space. Any reason for this?
>
> Katie Rudd, Ph.D.
> postdoc, Trask Lab
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. North
> C3-111
> Seattle, WA 98109
>
> 206-667-1471
>
> mrudd at fhcrc.org
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