[Genome] nib utilities?

[Davide Cittaro]

Hi all, in order to get sequences from genomes I found that nibFrag  
does the job I need (-> get a sequence in a specified range).  
Nevertheless every time I launch, it reads the wanted nib files and  
gives the output to a fasta file. While the continuous reads results  
in a slow down of the process (if I have to get 100000 sequences it  
takes some time), it seems that the output cannot be appended nor  
sent to stdout.
I wonder if there is a way to get fragments from a gfServer that is  
already running (so that nib files have been loaded previously) and  
which other utilities can handle nib files.

thanks

d
/*
Davide Cittaro
HPC and Bioinformatics Systems @ Informatics Core

IFOM - Istituto FIRC di Oncologia Molecolare
via adamello, 16
20139 Milano
Italy

tel.: +39(02)574303355
e-mail: davide.cittaro at ifom-ieo-campus.it
*/