[Genome] about "hg18.panTro2.all.chain.gz"
Jun Wang
wangj at uchicago.edu
Fri Oct 6 12:11:42 PDT 2006
Hello everyone,
I am wondering whether the file "hg18.panTro2.all.chain.gz" is the
chain file of reciprocal best hits between human and chimp genomes,
or the file of just one-direction hits,e.g. from human to chimp.
If it is not the chain file of reciprocal best hits, I am wondering
whether you have generated it and where I can find it.
btw, I did look at the chain file and found that there are many
cases that the same query was aligned to different hits or several
different queries were aligned to the same hit.
Thanks a lot!
Jun
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