November 2006 Archives by date

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Starting: Wed Nov 1 02:40:28 PST 2006
Ending: Thu Nov 30 17:22:24 PST 2006
Messages: 219

• [Genome] questions for knowngene to refseq   mirrian at iis.sinica.edu.tw
• [Genome] questions for knowngene to refseq   Fan Hsu
• [Genome] genome browser question   Allison Cox
• [Genome] genome browser question   Archana Thakkapallayil
• [Genome] genome browser question   Hiram Clawson
• [Genome] finding breaks in human-other synteny   Adnan Derti
• [Genome] accessing the encode region for the HOX locus   bina at purdue.edu
• [Genome] accessing the encode region for the HOX locus   Kate Rosenbloom
• [Genome] genome browser question   Robert Kuhn
• [Genome] finding breaks in human-other synteny   Ann Zweig
• [Genome] Two ENCODE tracks to be added to the Browser   zhengdong.zhang at yale.edu
• [Genome] accessing the encode region for the HOX locus   Ann Zweig
• [Genome] What is difference?   Hairong Wei
• [Genome] Two ENCODE tracks to be added to the Browser   Kate Rosenbloom
• [Genome] What is difference?   Hiram Clawson
• [Genome] C. elegans refGene and sangerToRefSeq tables   Andrew Kwon
• [Genome] C. elegans refGene table and sangerGene table   Andrew Kwon
• [Genome] Human Promoters   Liron Levkovitz
• [Genome] UCSC Genome browser data on portable disk?   Inus Scheepers
• [Genome] cDNA Microarrays data   Adi Gherman
• [Genome] Human Promoters   Mike Mitchell
• [Genome] UCSC Genome browser data on portable disk?   Hiram Clawson
• [Genome] cDNA Microarrays data   Archana Thakkapallayil
• [Genome] C. elegans refGene table and sangerGene table   Hiram Clawson
• [Genome] How do I reply to messages in this mailing list ?   fungazid fungazid
• [Genome] How do I reply to messages in this mailing list ?   Brooke Rhead
• [Genome] Rat Ensembl genes and QTLs   Dixon, Dr R.
• [Genome] How do I reply to messages in this mailing list ?   fungazid fungazid
• [Genome] problems in loading repeat masker to mysql   fungazid fungazid
• [Genome] Human Genome Build   Jesus Maria Lopez
• [Genome] Human Genome Build   Ann Zweig
• [Genome] Rat Ensembl genes and QTLs   Archana Thakkapallayil
• [Genome] ESPERR data in UCSC   Benjamin Berman
• [Genome] Grouping custom tracks   Minou Bina
• [Genome] Grouping custom tracks   Ann Zweig
• [Genome] ESPERR data in UCSC   Ann Zweig
• [Genome] ESPERR data in UCSC   Benjamin Berman
• [Genome] Genome Browser question: collapsing regions not of interest   Adnan Derti
• [Genome] mRNA to genomic sequence   Lomelin, David
• [Genome] location of .tpa files   Jonathan Miller
• [Genome] Human/Chimp Annotation Files   James C Farslow
• [Genome] location of .tpa files   Donna Karolchik
• [Genome] Table browser / FTP site discrepancy   Benjamin Berman
• [Genome] location of .tpa files   Ewan Birney
• [Genome] location of .tpa files   Jonathan Miller
• [Genome] Genome Browser question: collapsing regions not of interest   Archana Thakkapallayil
• [Genome] How to link TreeFam ?   zhongzhongchen
• [Genome] Batch BLATs   Robert Palermo
• [Genome] [Q] How to retrieve cytoband data of hundreds of SNPs in batch   이환석
• [Genome] Batch BLATs   Donna Karolchik
• [Genome] mRNA to genomic sequence   Donna Karolchik
• [Genome] Table browser / FTP site discrepancy   Donna Karolchik
• [Genome] [Q] How to retrieve cytoband data of hundreds of SNPs in batch   Heather Trumbower
• [Genome] Program to calculate AL CpG Islands available?   Shan Yang
• [Genome] How to link TreeFam ?   Donna Karolchik
• [Genome] Human Promoters   Liron Levkovitz
• [Genome] Human Promoters   Mike Mitchell
• [Genome] Genesorter table export - Errors in column headers   Anil Jegga
• [Genome] Custom track question   jp d
• [Genome] finding information   Grace Gathungu
• [Genome] Human Promoters   Brooke Rhead
• [Genome] error limit in HHS   Minou Bina
• [Genome] error limit in HHS   Kate Rosenbloom
• [Genome] Custom track question   Kate Rosenbloom
• [Genome] Human/Chimp Annotation Files   Archana Thakkapallayil
• [Genome] finding information   Brooke Rhead
• [Genome] Program to calculate AL CpG Islands available?   Donna Karolchik
• [Genome] Genesorter table export - Errors in column headers   Kayla Smith
• [Genome] Net data   Emmanuel Buschiazzo
• [Genome] Transcription Factor Binding Site   ????? ???? - Giladi Hilla
• [Genome] fosmid clones   Jinglan Liu
• [Genome] Net data   Ann Zweig
• [Genome] exon annotation   Paradis Pierre
• [Genome] pdf file   Orten, Dana J
• [Genome] Transcription Factor Binding Site   Ann Zweig
• [Genome] exon annotation   Fan Hsu
• [Genome] pdf file   Ann Zweig
• [Genome] pdf file   Hiram Clawson
• [Genome] fosmid clones   Ann Zweig
• [Genome] Question regarding parsing BLAT search result   Yavatkar, Amarendra (NIH/NINDS) [C]
• [Genome] Question regarding parsing BLAT search result   Ann Zweig
• [Genome] Using web blat   Wes Barris
• [Genome] bosTau2 and rheMac2 EST library updates   Hoover, David (NIH/CIT) [E]
• [Genome] the question of UCSC Genome Browser   M95360012 at ntou.edu.tw
• [Genome] bug   Silvia Jimenez
• [Genome] Local Customer Tracks make alpha failed again   B. Liu
• [Genome] bug   Heather Trumbower
• [Genome] Using web blat   Rachel Harte
• [Genome] medaka?   DIANA ALLEN
• [Genome] the question of UCSC Genome Browser   Rachel Harte
• [Genome] medaka?   Rachel Harte
• [Genome] bosTau2 and rheMac2 EST library updates   Heather Trumbower
• [Genome] medaka?   Hiram Clawson
• [Genome] question about 3' UTR sequences   Sara T Hashimi
• [Genome] KGxRef   babru
• [Genome] Probe design   rbelc001 at student.ucr.edu
• [Genome] Table browser Problems   Weinhäusel Andreas
• [Genome] Entrez gene ID linked mapping positions for mm8   Hansen, Gwenn
• [Genome] gfClient error: Can't open 2bit file for reading   Vincenzo Forgetta
• [Genome] Table browser Problems   Kayla Smith
• [Genome] Entrez gene ID linked mapping positions for mm8   Archana Thakkapallayil
• [Genome] Probe design   Kayla Smith
• [Genome] question about 3' UTR sequences   Archana Thakkapallayil
• [Genome] KGxRef   Kayla Smith
• [Genome] question regarding In-Silico PCR   Braithwaite, Adam
• [Genome] gfClient error: Can't open 2bit file for reading   Archana Thakkapallayil
• [Genome] Re: Update in HMR Conserved Transcription Factor Binding Sites track   Rachel Harte
• [Genome] question regarding In-Silico PCR   Rachel Harte
• [Genome] [Fwd: intron question]   Rachel Harte
• [Genome] [Fwd: intron question]   Rachel Harte
• [Genome] URL for accession to mRNA genomic sequence   Lomelin, David
• [Genome] TFBS conserved   Barbara Felice
• [Genome] Question?   Luis Barreiro
• [Genome] summary of gene function   James Potash
• [Genome] Task   Donna Kusewitt
• [Genome] TFBS conserved   Ann Zweig
• [Genome] tableDescriptions content   Ann Zweig
• [Genome] Question?   Ann Zweig
• [Genome] New assemblies for Drosophila genomes?   Laura Sirot
• [Genome] a bug?   Silvia Jimenez
• [Genome] URL for accession to mRNA genomic sequence   Hiram Clawson
• [Genome] summary of gene function   Archana Thakkapallayil
• [Genome] Task   Ann Zweig
• [Genome] New assemblies for Drosophila genomes?   Ann Zweig
• [Genome] URL for accession to mRNA genomic sequence   Lomelin, David
• [Genome] Hopefully not a silly question   Mike Mitchell
• [Genome] local gfClient / gfServer vs. web BLAT on short sequences   Julien Lagarde
• [Genome] questions   Aristotelis Tsirigos
• [Genome] questions   Brooke Rhead
• [Genome] liftOver Intel Mac executable   Xiaolin Wu
• [Genome] question concerning identifing genes in a particular region   Emily Stevens
• [Genome] Reactome 19 released   Reactome-Knowledgebase at reactome.org
• [Genome] a bug?   Ann Zweig
• [Genome] I like the genome browser, and the new custom track management   Gogol, Madelaine
• [Genome] liftOver Intel Mac executable   Ann Zweig
• [Genome] question concerning identifing genes in a particular region   Ann Zweig
• [Genome] local gfClient / gfServer vs. web BLAT on short sequences   Julien Lagarde
• [Genome] local gfClient / gfServer vs. web BLAT on short sequences   Brooke Rhead
• [Genome] Hopefully not a silly question   Brooke Rhead
• [Genome] Hopefully not a silly question   Brooke Rhead
• [Genome] Blat question   Wes Barris
• [Genome] extracting values from Affymetrix tiling .wib files   Adnan Derti
• [Genome] liftOver Intel Mac executable   Davide Cittaro
• [Genome] custom tracks   Karen Hayden
• [Genome] local gfClient / gfServer vs. web BLAT on short sequences   Brooke Rhead
• [Genome] Transcription Factor Binding Site   Ann Zweig
• [Genome] Blat question   Heather Trumbower
• [Genome] Blat question   Wes Barris
• [Genome] custom tracks   Archana Thakkapallayil
• [Genome] local gfClient / gfServer vs. web BLAT on short sequences   Julien Lagarde
• [Genome] is there a fast BED2seq tool?   Rachel Harte
• [Genome] liftOver Intel Mac executable]   Rachel Harte
• [Genome] is there a fast BED2seq tool?   Rachel Harte
• [Genome] Problems with uploaded file in Table Browser???   Bas Jansen
• [Genome] FASTA conversion   rbelc001 at student.ucr.edu
• [Genome] is there a fast BED2seq tool?   Hiram Clawson
• [Genome] Blat question   Heather Trumbower
• [Genome] Problems with uploaded file in Table Browser???   Rachel Harte
• [Genome] FASTA conversion   Rachel Harte
• [Genome] dbSNP and HapMap mappings to Hg17/18   Alistair Chalk
• [Genome] is there a fast BED2seq tool?   Stein Aerts
• [Genome] Q on Using Table Browser to Get Sequence   Scott Yang
• [Genome] encode   rich
• [Genome] Question regarding Tabe Browser   Anton Kratz
• [Genome] is there a fast BED2seq tool?   Hiram Clawson
• [Genome] Q on Using Table Browser to Get Sequence   Ann Zweig
• [Genome] Batch Mapping hg17 positions to hg18   Mike Mitchell
• [Genome] encode   Ann Zweig
• [Genome] Batch Mapping hg17 positions to hg18   Ann Zweig
• [Genome] dbSNP and HapMap mappings to Hg17/18   Heather Trumbower
• [Genome] is there a fast BED2seq tool?   Hiram Clawson
• [Genome] extracting values from Affymetrix tiling .wib files   Kayla Smith
• [Genome] Question regarding Tabe Browser   Ann Zweig
• [Genome] local gfClient / gfServer vs. web BLAT on short sequences   Brooke Rhead
• [Genome] batch Blat run   Michael Place
• [Genome] What is exon frame?   mousheng xu
• [Genome] batch Blat run   Ann Zweig
• [Genome] liftOver Intel Mac executable]   Xiaolin Wu
• [Genome] What is exon frame?   Ann Zweig
• [Genome] [genome]How to predict the origin region?   =?gb2312?B?u8YguqM=?=
• [Genome] (no subject)   Ken McELREAVEY
• [Genome] [genome]How to predict the origin region?   Robert Kuhn
• [Genome] filter problem on ENCODE UW/Reg DNAse tracks   Tim Hefferon
• [Genome] [UCSC genome browser] Question on Yeast annotation   Joo Sang Lee
• [Genome] (no subject)   Heather Trumbower
• [Genome] QUERY   Ankur Mukherjee
• [Genome] QUERY   Archana Thakkapallayil
• [Genome] Q   Bino John
• [Genome] coloring silent and replacement snps on snp track   Amit Indap
• [Genome] making a custom track   Morell, Robert (NIH/NIDCD) [E]
• [Genome] coloring silent and replacement snps on snp track   Heather Trumbower
• [Genome] Q   Archana Thakkapallayil
• [Genome] making a custom track   Kate Rosenbloom
• [Genome] filter problem on ENCODE UW/Reg DNAse tracks   Rachel Harte
• [Genome] refFlat or refGene file for yeast   Wenxiu
• [Genome] Phastcons   Ditsa
• [Genome] refFlat or refGene file for yeast   Rachel Harte
• [Genome] CpG Island data source   Sally Gaddis
• [Genome] CpG Island data source - oh I found it   Sally Gaddis
• [Genome] Mouse liftAll file   Wong, Brant
• [Genome] CpG Island data source   Rachel Harte
• [Genome] Mouse liftAll file   Rachel Harte
• [Genome] Mouse liftAll file   Wong, Brant
• [Genome] 3rd-party implementations of TEIRESIAS and SPLASH algorithms   Dominik Margraf
• [Genome] Phastcons   Rachel Harte
• [Genome] possible errors in web pages.   Yutao Fu
• [Genome] affymetrix 500k snp track coloring   Yohan Lee
• [Genome] ENCODE data submission   Keith Ching
• [Genome] 3rd-party implementations of TEIRESIAS and SPLASHalgorithms   Donna Karolchik
• [Genome] affymetrix 500k snp track coloring   Heather Trumbower
• [Genome] gene alignment   Krista R Casazza
• [Genome] D.melanogaster browser not loading?   John Major
• [Genome] gene alignment   Brooke Rhead
• [Genome] question on table browser   Qu, Chunxu
• [Genome] custom scripting for probe design   rbelc001 at student.ucr.edu
• [Genome] question about BLAT   William Hastings
• [Genome] question on table browser   Brooke Rhead
• [Genome] ENCODE data submission   Kate Rosenbloom
• [Genome] problem with exon coordinates - do not match exactly   Brooke Rhead

Last message date: Thu Nov 30 17:22:24 PST 2006
Archived on: Thu Nov 30 17:37:31 PST 2006

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