[Genome] encode

[Ann Zweig]

Hello Rich,

	We have the raw sequencing ENCODE data available on our website.  It is in the 
download section of the ENCODE part of our site.  From the home page, click on 
the ENCODE link.  From the ENCODE project home page, click on the Downloads 
link.  From the Downloads page, click on "Nucleotide Sequences" for the assembly 
you are interested in.  On this page you will see the zipped file for the fasta 
sequence for all 44 ENCODE regions.

	As for your second question, I'm not sure about the answer.  Your question may 
be better suited for the group that actually did the sequencing: the HapMap 
consortium ( http://www.hapmap.org/ )


Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu



rich wrote:
> Hi does anyone know where I can get the raw sequencing from for the 
> encode data?
> Basically, I'd like to know  all of the snps that were discovered in the 
> encode sequencing project. Would they all have been submitted to dnSNP 
> or would they only have submitted novel ones not already in the db?
> 
> cheers
> Rich
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
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