[Genome] Problems with uploaded file in Table Browser???

[Rachel Harte]

Dear Bas, From the file of sno/miRNA identifiers that you sent, I see the
problem.  The Table Browser is not case-insensitive. The identifiers that
you sent include those with "miR" in their name. In our database, they are
stored wiht a lower case "r" e.g. hsa-mir-15b. if you change "miR" to
"mir" in all the identifiers then they should work in the Table Browser.

I hope that this helps you. Please let us know if you have further
questions.

Rachel

Rachel Harte
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu


On Tue, 21 Nov 2006, Bas Jansen wrote:

> Dear genome gurus:
>
> I am trying to obtain some (~ 25) promoters of microRNAs through the
> Table Browser (via the sno/miRNA track, table wgRna). I can upload the
> or paste its contents with the miRNA names (hsa-mir-<any number>) but
> when I want the output in BED format, only the first miRNA in my list
> pops up, and all the others are ignored. The names of the miRNAs are
> separated by a whitespace, which I believe should be OK, according to
> the User Guide. The file is a .txt file, generated in BBedit, on a
> PowerBook with Mac OS X 10.4.8. Thank you for your help.
>
> Regards,
> Bas Jansen
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