[Genome] exon annotation

[Fan Hsu]

Hi Pierre,

Which genome release(s) were you using?

I looked at the latest hg18 (March, 2006) and the previous release hg17
(May, 2004),
they both seem to have the 7 exons GATA4 in our UCSC Known Genes track.

Fan.
-----Original Message-----
From: genome-bounces at soe.ucsc.edu [mailto:genome-bounces at soe.ucsc.edu]On
Behalf Of Paradis Pierre
Sent: Thursday, November 09, 2006 12:15 PM
To: genome at soe.ucsc.edu
Subject: [Genome] exon annotation


We have found a possible anotation error for the human and mouse GATA4 gene.
In Ensembl, we have observed 7 exons while we observe only 6 in UCSC.
However, if we blat the cDNA in UCSC, than the extra exon appears.

Sincerely,

Pierre

Pierre Paradis, Ph.D.,
Chercheur associé chevronné,
Laboratoire de Développement et Différenciation Cardiaques,
Institut de Recherches Cliniques de Montréal (IRCM),
110 des Pins ouest,
Montréal, Québec
Canada, H2W 1R7
Tel : 514-987-5658  /  Fax: : 514-987-5575
pierre.paradis at ircm.qc.ca


Pierre Paradis, Ph.D.,
Chercheur associé chevronné,
Laboratoire de Développement et Différenciation Cardiaques,
Institut de Recherches Cliniques de Montréal (IRCM),
110 des Pins ouest,
Montréal, Québec
Canada, H2W 1R7
Tel : 514-987-5658  /  Fax: : 514-987-5575
pierre.paradis at ircm.qc.ca

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