[Genome] How to link TreeFam ?
Donna Karolchik
donnak at soe.ucsc.edu
Tue Nov 7 19:31:19 PST 2006
hi Chen,
Thanks for your email. We are interested in this data set, and are discussing
how best to incorporate it into the Genome Browser. One of our engineers will
contact you in the next day or so about this.
-Donna
-----------------------------------
Donna Karolchik
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu
----- Original Message -----
From: "zhongzhongchen" <chenzhzh at genomics.org.cn>
To: <genome at soe.ucsc.edu>
Sent: Monday, November 06, 2006 9:52 PM
Subject: [Genome] How to link TreeFam ?
> Dear UCSC genome browser,
>
> Please allow me to send a e-mail.
> I am working for TreeFam(http://www.treefam.org/), Beijing Genomics
> Institute & Chinese Academy of Sciences, in China.
>
> TreeFam is a database of phylogenetic trees of gene families found in
> animals. It aims to develop a curated resource
> that represents the accurate evolutionary history of all animal gene
> families, as well as reliable ortholog and paralog
> assignments.
>
> We are now considering ways to display the data and would like to know
> if it is possible to submit our data so it can be
> seen as tracks on the UCSC public genome browser and more research
> community will share it.
> What we have expected is to display in this way: display an Ensembl gene
> on the human genome, and go to TreeFam if someone
> clicks that gene.
>
> Possible examples would be:
> ENST00000383548 TreeFam
> http://www.treefam.org/cgi-bin/TFinfo.pl?ac=ENST00000383548
> That is when someone click TreeFam, it will go to
> http://www.treefam.org/cgi-bin/TFinfo.pl?ac=ENST00000383548.
>
>
> We will be very pleased if you approve the linkage and tell me how to do
> it.
>
> Thanks in advance!
>
> Chen Zhongzhong ^_^
> ______________________________________
> Beijing Genomics Institute
> Chinese Academy of Sciences
> Address:
> Beijing Airport Industrial Zone B-6
> Beijing, 101300, China
> Tel: 86-10-8048-1197,1197
> (http://www.treefam.org/)
>
> _______________________________________________
> Genome maillist - Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome
>
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