[Genome] C. elegans refGene and sangerToRefSeq tables

Andrew Kwon tjkwon at cmmt.ubc.ca
Wed Nov 1 20:52:04 PST 2006


To whom it may concern:

I downloaded the C. elegans refGene, sangerGene and sangerToRefSeq tables
from UCSC ftp site. While going through the records, I ran into trouble with
some of the records.  More specifically, when you view the C. elegans genome
browser, ZK686.2 is given the refseq id NM_066289, and ZK686.5 is given
NM_001027859.  However, from the tables I downloaded, ZK686.5 is associated
with NM_066289 in sangerToRefSeq table.  NM_001027859 is present in refGene
table, but not in sangerToRefSeq table.  Is this a faulty annotation, or am
I making a mistake somewhere? 

Andrew T. Kwon
Wasserman Lab
CMMT UBC 





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