[Genome] Human Promoters

Liron Levkovitz lironle4 at post.tau.ac.il
Thu Nov 2 05:11:06 PST 2006


Hello,

I've downloaded the file upstream1000.zip of Human (hg18) and I've noticed
there are some promoters in the file with different RefSeq id's, but with
the same locations and therefore the same sequences (see example below).
What is the meaning of the different Id's?

Thanks
Liron Levkovitz
M.Sc Student
Tel- Aviv University
 

>NM_058167_up_1000_chr1_1199098_r
ttcccacgggctgaggctgcgtggacactcctcctggcttctgccccacggcctgcagcaacgtctcagacccacc
aaggtgtcccagagggccagagtcagggctgagcatggacacagcctgccctctgcccgtagccacagcgggactg
accctcaatattcagccaccttgctgacctgtggttgttcctgagaggcagtcagggttggggcaaaggagagggc
cacaggcagccaggtggcgaggtccacctcctgatcccccaccaggggaccaccctcagctccccgctgtcctcag
cggcctctcagggaggcggtgggctgcgcgcctgcccccagcgtcccaccccagcgccccgccacctaccgctctc
tcccaatgtgtctggggtcagagagaggtggagaggacgcagcgccccgcgctttctgcagtctgtccaaggggag
gtcaggggcatcccggggctgggcaggcacctgcaggggagggtgctgcggcgcggacgtgggttgcaaagagatg
ccacgcgtgtcactctcgggtccctgaacgagagagctctgagctccctggagcccaaccctccactgagcctcca
ggggcccgggacgctccatgcccgggccgcgccgcgcctcccctaagggccgggtggggcgtgggagcggaggaca
aggcgggagccgggaggcgggagggtcggggttctttctccaccggggtcgccctcagccgggcctgccgccctgg
gccgtggcacatggggagggaagcgcgcggcttcggggtctggggctctcgcgcccactaacggtgcccggagccg
cccgccagtgcgcaagcgccgccccgccccccgccccatcccccaccccggggtcgacggcgacagagagtcgtgg
gcgcggtccgccagtctgcctagagcggccagccctccccctccctcctcaccgccccggaccgcgcaccggaagc
agaagctaggct
>NM_194315_up_1000_chr1_1199098_r
ttcccacgggctgaggctgcgtggacactcctcctggcttctgccccacggcctgcagcaacgtctcagacccacc
aaggtgtcccagagggccagagtcagggctgagcatggacacagcctgccctctgcccgtagccacagcgggactg
accctcaatattcagccaccttgctgacctgtggttgttcctgagaggcagtcagggttggggcaaaggagagggc
cacaggcagccaggtggcgaggtccacctcctgatcccccaccaggggaccaccctcagctccccgctgtcctcag
cggcctctcagggaggcggtgggctgcgcgcctgcccccagcgtcccaccccagcgccccgccacctaccgctctc
tcccaatgtgtctggggtcagagagaggtggagaggacgcagcgccccgcgctttctgcagtctgtccaaggggag
gtcaggggcatcccggggctgggcaggcacctgcaggggagggtgctgcggcgcggacgtgggttgcaaagagatg
ccacgcgtgtcactctcgggtccctgaacgagagagctctgagctccctggagcccaaccctccactgagcctcca
ggggcccgggacgctccatgcccgggccgcgccgcgcctcccctaagggccgggtggggcgtgggagcggaggaca
aggcgggagccgggaggcgggagggtcggggttctttctccaccggggtcgccctcagccgggcctgccgccctgg
gccgtggcacatggggagggaagcgcgcggcttcggggtctggggctctcgcgcccactaacggtgcccggagccg
cccgccagtgcgcaagcgccgccccgccccccgccccatcccccaccccggggtcgacggcgacagagagtcgtgg
gcgcggtccgccagtctgcctagagcggccagccctccccctccctcctcaccgccccggaccgcgcaccggaagc
agaagctaggct
>NM_194457_up_1000_chr1_1199098_r
ttcccacgggctgaggctgcgtggacactcctcctggcttctgccccacggcctgcagcaacgtctcagacccacc
aaggtgtcccagagggccagagtcagggctgagcatggacacagcctgccctctgcccgtagccacagcgggactg
accctcaatattcagccaccttgctgacctgtggttgttcctgagaggcagtcagggttggggcaaaggagagggc
cacaggcagccaggtggcgaggtccacctcctgatcccccaccaggggaccaccctcagctccccgctgtcctcag
cggcctctcagggaggcggtgggctgcgcgcctgcccccagcgtcccaccccagcgccccgccacctaccgctctc
tcccaatgtgtctggggtcagagagaggtggagaggacgcagcgccccgcgctttctgcagtctgtccaaggggag
gtcaggggcatcccggggctgggcaggcacctgcaggggagggtgctgcggcgcggacgtgggttgcaaagagatg
ccacgcgtgtcactctcgggtccctgaacgagagagctctgagctccctggagcccaaccctccactgagcctcca
ggggcccgggacgctccatgcccgggccgcgccgcgcctcccctaagggccgggtggggcgtgggagcggaggaca
aggcgggagccgggaggcgggagggtcggggttctttctccaccggggtcgccctcagccgggcctgccgccctgg
gccgtggcacatggggagggaagcgcgcggcttcggggtctggggctctcgcgcccactaacggtgcccggagccg
cccgccagtgcgcaagcgccgccccgccccccgccccatcccccaccccggggtcgacggcgacagagagtcgtgg
gcgcggtccgccagtctgcctagagcggccagccctccccctccctcctcaccgccccggaccgcgcaccggaagc
agaagctaggct
>NM_194458_up_1000_chr1_1199098_r
ttcccacgggctgaggctgcgtggacactcctcctggcttctgccccacggcctgcagcaacgtctcagacccacc
aaggtgtcccagagggccagagtcagggctgagcatggacacagcctgccctctgcccgtagccacagcgggactg
accctcaatattcagccaccttgctgacctgtggttgttcctgagaggcagtcagggttggggcaaaggagagggc
cacaggcagccaggtggcgaggtccacctcctgatcccccaccaggggaccaccctcagctccccgctgtcctcag
cggcctctcagggaggcggtgggctgcgcgcctgcccccagcgtcccaccccagcgccccgccacctaccgctctc
tcccaatgtgtctggggtcagagagaggtggagaggacgcagcgccccgcgctttctgcagtctgtccaaggggag
gtcaggggcatcccggggctgggcaggcacctgcaggggagggtgctgcggcgcggacgtgggttgcaaagagatg
ccacgcgtgtcactctcgggtccctgaacgagagagctctgagctccctggagcccaaccctccactgagcctcca
ggggcccgggacgctccatgcccgggccgcgccgcgcctcccctaagggccgggtggggcgtgggagcggaggaca
aggcgggagccgggaggcgggagggtcggggttctttctccaccggggtcgccctcagccgggcctgccgccctgg
gccgtggcacatggggagggaagcgcgcggcttcggggtctggggctctcgcgcccactaacggtgcccggagccg
cccgccagtgcgcaagcgccgccccgccccccgccccatcccccaccccggggtcgacggcgacagagagtcgtgg
gcgcggtccgccagtctgcctagagcggccagccctccccctccctcctcaccgccccggaccgcgcaccggaagc
agaagctaggct




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