[Genome] compiling overlapSelect

Hiram Clawson hiram at soe.ucsc.edu
Thu Dec 28 11:30:56 PST 2006


Good Afternoon Amit:

We'll have to check with the developer of those lines of code
and see if those calls can be changed to just fputc and fputs
instead of these _unlocked forms.  I don't see those functions
defined anywhere in the Mac libraries.

--Hiram

On 2006 Dec 28, , at 10:25 AM, Amit Indap wrote:

> Hi UCSC
>
> I downloaded jksrc v146 and am trying to compile overlapSelect on a 
> MacBook laptop and I get:
>
> cc1: warnings being treated as errors
> chromAnn.c: In function 'chromAnnWrite':
> chromAnn.c:90: warning: implicit declaration of function 
> 'fputc_unlocked'
> chromAnn.c:91: warning: implicit declaration of function 
> 'fputs_unlocked'
> make: *** [chromAnn.o] Error 1
>
> I couldn't find where these functions are being declared (it wasn't in 
> the chromAnn.h file)
>
> If you could point me in the right direction on how to fix this, that 
> would be great.
>
> Amit Indap
> Cornell University
>
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