[Genome] Exon Frames

[Ann Zweig]

Hello Craig,

	Please see this previously answered mail list question for an answer to your 
question:  http://www.cse.ucsc.edu/pipermail/genome/2006-November/012218.html

	If this doesn't answer your question, please don't hesitate to write back.


Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu


Craig Rothman wrote:
> I don't understand what the exonFrames category is in the refGene Table?
> For example, using hg18 RefSeq NM_014248, which has this entry:
> 887    NM_014248    chr22    +    39677330    39698612    39677348
> 39698438    5    39677330,39679504,39689996,39693748,39698425,
> 39677426,39679583,39690067,39693834,39698612,    0    RBX1    cmpl
> cmpl    0,0,1,0,2,
> 
> If one were to find the exon frame by dividing each exon length by 3, one
> would not get 0,0,1,0,2, so I was wondering what the exonFrame represents?
> 
> Thanks.
> 
> Sincerely,
> Craig Rothman
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
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