[Genome] gene clusters in genome browser

[Philippe DESSEN]

Dear colleague,

It seems impossible to query gene cluster on the Genome browser ??

If you refer to Entrez_Gene or HUGO , it is defined cluster of genes  
with an @.
It would be of great interest to have directly access to the clusters  
instead to search
for all genes inside.

Is there a specific reason ?

Best regards

Philippe Dessen



Examples actually in Entre_Gene :

FAUNA@  -       FAU neighboring area cluster
HOXA@   HOX1@   homeobox A cluster
HOXB@   HOX2@   homeobox B cluster
HOXC@   HOX3@   homeobox C cluster
HOXD@   HOX4@   homeobox D cluster
IFN1@   IFNA    interferon, type 1, cluster
IFNA1   IFL;IFN;IFN-ALPHA;IFNA13;IFNA@;MGC138207;MGC138505;MGC138507     
interferon, alpha 1
IGH@    IGH;IGH.1@;IGHDY1       immunoglobulin heavy locus
IGHDOR15@       IGD2;IGHD/OR15;IGHDY2   immunoglobulin heavy diversity  
orphans on chromosome 15
IGHJ@   IGHJ    immunoglobulin heavy joining group
IGHV@   IGHV    immunoglobulin heavy variable group
IGHVOR15@       IGHV;IGHV/OR15;IGHV2@;OR15      immunoglobulin heavy  
variable orphans on chromosome 15
IGHVOR16@       IGHV;IGHV/OR16;IGHV/OR16@;IGHV3@;OR16;V(H-F)     
immunoglobulin heavy variable orphans on chromosome 16
IGKV@   IGKV;IGKV1;IGKV1@;IGKV2;IGKV2@;IGKV3;IGKV3@     immunoglobulin  
kappa variable group
IGKVOR2@        IGKV/OR2;IGKVP@;IGO1    Immunoglobulin kappa variable  
orphans on chromosome 2
IGL@    IGL     immunoglobulin lambda locus
IGLC@   IGLC    immunoglobulin lambda constant group
IGLV@   IGLV    immunoglobulin lambda variable group
OLFR@   OLFR at A  olfactory receptor cluster
PGA@    -       pepsinogen A gene cluster
PR@     SPC     proline-rich protein gene cluster
RN5S1@  RN5S    RNA, 5S cluster 1
RN5S2@  -       RNA, 5S cluster 2
RN5S3@  -       RNA, 5S cluster 3
SAA@    SAA;SAA4        serum amyloid A1 cluster
SMA@    SMA     spinal muscular atrophy (Werdnig-Hoffmann disease,  
Kugelberg-Welander disease)
TRA@     
FLJ22602;MGC117436;MGC22624;MGC23964;MGC71411;TCRA;TCRD;TRA;TRDD3        
T cell receptor alpha locus
TRB@    TCRB;TRB        T cell receptor beta locus
TRBVOR9@        TCRBVO@;TRBV/OR9        T cell receptor beta variable  
orphans on chromosome 9
TRD@    TCRD;TRD        T cell receptor delta locus
TRG@    TCRG;TRG        T cell receptor gamma locus
UGT1A@  GNT1;UGT;UGT1;UGT1A     UDP glucuronosyltransferase 1 family,  
polypeptide A cluster
UGT2B@  UGT2;UGT2B      UDP glucuronosyltransferase 2 family,  
polypeptide B cluster
IGKJ@   IGKJ    immunoglobulin kappa joining group
IGLJ@   IGLJ    immunoglobulin lambda joining group
IGHD@   -       immunoglobulin heavy diversity group
IGK@    IGK     immunoglobulin kappa locus
PCDHG@  PCDH2;PCDH4;PCDHG       protocadherin gamma cluster
PCDHB@  PCDH3   protocadherin beta cluster
PCDHA@  CNR1;CNRS1      protocadherin alpha cluster
DNM1DN1@        DNM1DN1-1;DNM1DN1-2;DNM1DN1-3;DNM1DN1-4;DNM1DN1-5        
DNM1 duplicon 1 cluster
DNM1DN2@        DNM1DN2;DNM1DN2-1;DNM1DN2-2;DNM1DN2-3;DNM1DN2-4 DNM1  
duplicon 2 cluster
DNM1DN3@        DNM1DN3-1;DNM1DN3-2;DNM1DN3-3;DNM1DN3-4 DNM1 duplicon 3  
cluster
DNM1DN4@         
DNM1DN4;DNM1DN4-1;DNM1DN4-2;DNM1DN4-3;DNM1DN4-4;DNM1DN4-5       DNM1  
duplicon 4 cluster
DNM1DN7@        DNM1DN7;DNM1DN7-1;DNM1DN7-2     DNM1 duplicon 7 cluster
DNM1DN8@        DNM1DN8-1;DNM1DN8-2;DNM1DN8-3;DNM1DN8-4;DNM1DN8-5        
DNM1 duplicon 8 cluster
DNM1DN9 DNM1DN9-1;DNM1DN9@      DNM1 duplicon 9
DNM1DN10@       DNM1DN10-1;DNM1DN10-2   DNM1 duplicon 10 cluster
DNM1DN11@        
DNM1DN11-1;DNM1DN11-10;DNM1DN11-11;DNM1DN11-12;DNM1DN11-13;DNM1DN11-14; 
DNM1DN11-2;DNM1DN11-3;DNM1DN11-4;DNM1DN11-5;DNM1DN11-6;DNM1DN11-7; 
DNM1DN11-8;DNM1DN11-9  DNM1 duplicon 11 cluster
DNM1DN12@       DNM1DN12-1;DNM1DN12-2;DNM1DN12-3        DNM1 duplicon  
12 cluster
DNM1DN14@       DNM1DN14-1;DNM1DN14-2;DNM1DN14-3;DNM1DN14-4     DNM1  
duplicon 14 cluster
DNM1DN15@       DNM1DN15-1;DNM1DN15-2;DNM1DN15-3        DNM1 duplicon  
15 cluster
DNM1DN16@       DNM1DN16-1;DNM1DN16-2;DNM1DN16-3        DNM1 duplicon  
16 cluster
DNM1DN17        DNM1DN17@       DNM1 duplicon 17
DNM1DN5 DNM1DN5@        DNM1 duplicon 5
SNORD113@       14q(I)  small nucleolar RNA, C/D box 113 cluster
SNORD114@       14q(II) small nucleolar RNA, C/D box 114 cluster
SNORD115@       HBII-52 small nucleolar RNA, C/D box 115 cluster
SNORD3@ U3;U3A;U3B      small nucleolar RNA, C/D box 3 cluster
SNORD116@       HBII-85 small nucleolar RNA, C/D box 116 cluster


------------------------------------------------------------------------ 
------------
Philippe DESSEN                    Laboratoire "Génomes et Cancers" FRE  
2939 CNRS
Institut de Cancérologie Gustave Roussy - PR1           39 rue Camille  
Desmoulins
94805 VILLEJUIF Cedex - tel : 0142114490 fax : 0142116267  e-mail :  
dessenATigr.fr
------------------------------------------------------------------------ 
------------
Soutenez le mouvement SAUVONS LA RECHERCHE :  
http://recherche-en-danger.apinc.org