[Genome] rRNAs and tRNAs in the human genome

[Ann Zweig]

Hello Ralph-

	You are correct.  We do not have an annotated track on the human 
browser for rRNA or tRNA.  One of our developers has suggested that you 
try these two sites:

for tRNA:  http://lowelab.ucsc.edu/GtRNAdb/

for rRNA:  http://www.psb.rug.ac.be/rRNA/


	Hope this is helpful.


Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu



Ralph Haygood wrote:
> I'm examining some regions of the human genome that lie between Santa
> Cruz known genes, so I know they don't contain any known protein-
> coding transcripts.  I'd also like to know they don't contain any
> known ribosomal or transfer RNA transcripts.  Can you advise me how
> to proceed, preferably using your Table Browser?  I'm aware of the
> sno/miRNA annotation track, which I can use to exclude miRNAs,
> snoRNAs, and scaRNAs, but I haven't noticed an annotation track that
> includes rRNAs or tRNAs.  Thanks.
> 
> Ralph Haygood
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome