Assistant Professor, Biomolecular Engineering

Baskin School of Engineering
1156 High St
Mail Stop SOE2
Santa Cruz, CA 95064

Phone Number: 831-502-7394

Office Location: Biomed 146

E-Mail Address:

Web Page

• Green Lab

Degrees

• Ph.D. in Molecular & Cell Biology, 2005, UC Berkeley
• B.S. in Genetics, 1997, University of Georgia

Research Areas

Genomics, computational molecular biology, genome assembly, human evolutionary genetics, ancient DNA, high-throughput sequencing, mRNA-processing and alternative splicing

Selected Publications

• Green RE, Briggs AW, Krause J, Prüfer K, Burbano HA, Siebauer M, Lachmann M, Pääbo S. The Neandertal genome and ancient DNA authenticity. EMBO J. 2009 Sep 2;28(17):2494-502
• Green RE, Malaspinas AS, Krause J, Briggs AW, Johnson PL, Uhler C, Meyer M, Good JM, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano HA, Ronan M, Rothberg JM, Egholm M, Rudan P, Brajković D, Kućan Z, Gusić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell. 2008 Aug 8;134(3):416-26
• Lareau LF, Inada M, Green RE, Wengrod JC, Brenner SE. Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements. Nature. 2007 Apr 19;446(7138):926-9
• Green RE, Krause J, Ptak SE, Briggs AW, Ronan MT, Simons JF, Du L, Egholm M, Rothberg JM, Paunovic M, Pääbo S. Analysis of one million base pairs of Neanderthal DNA. Nature. 2006 Nov 16;444(7117):330-6
• Lewis BP, Green RE, Brenner SE. Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc Natl Acad Sci U S A. 2003 Jan 7;100(1):189-92

Current and Future Classes

Spring 2013

• BME 280B: Seminar on Bioinformatics
• BME 281E: Seminar in Genomics

Fall 2013

• BME 130: Genomes
• BME 281E: Seminar in Genomics

Winter 2014

• BME 230: Computational Genomics
• BME 230L: Computational Genomics Laboratory
• BME 281E: Seminar in Genomics

Spring 2014

• BME 80H: The Human Genome
• BME 281E: Seminar in Genomics

Students & Researchers

• James Andrew Cahill (Graduate)
• James Andrew Cahill (Graduate)
• Tara Lynn Fulton (Researcher)
• Kiley Graim (Graduate)
• Liana F Lareau (Researcher)
• Ben Jacob Novak (Researcher)
• Jackie Petz (Undergraduate)
• Rauf Salamzade (Undergraduate)
• John St. John (Graduate)
• Mathias Stiller (Researcher)
• Jonathan Stites (Undergraduate)

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