Index of class resources

Handouts

homework problem sets, homework solutions, other helpful handouts

General Class Information

class and section times, instructor and TA information

Old class web pages:

• Winter 1998 class web page
• Fall 1996 class web page

WWW resources for biosequence analysis

URLs for web sites containing biosequence analysis tools, but not well annotated. I could use some help merging this list with my personal one, and updating, organzing, and annotating the resulting list.

International Society for Computational Biology

Class notes and www pages for other bionformatics classes (maintained by ISCB)

List of on-line text resources for biosequence analysis

biospace.com: news, biotech companies, jobs

• Class description (catalog copy)
• Topics (by week)
• Class requirements and prerequisites
• text and reserve books for class
• Class projects
• homework assignments
  1. Homework 1 due Wed Oct 7
  2. Homework 2 due Fri Oct 16
  3. Homework 3 due Wed Oct 28
  4. Homework 4 due Wed Nov 11
  5. Homework 5 due Mon Nov 23
  6. Homework 6 due Wed Dec 9
  7. The project will be due Friday Dec 11 at 5pm.
• Lydia Gregoret's guest lecture from Fall '96
• I will be absent at conferences for Nov 30--Dec 4 (HMM workshop in Cambridge) and Dec 13-17 (CASP3 conference). I will arrange for guest lecturers during the earlier absence---the later one is during exam week, after the project is due.

Class newsgroup:

ucsc.class.cmps243

Lecture times:

MWF 12:30-1:40 Soc Sci I room 153

Instructor:

Kevin Karplus (karplus@cse.ucsc.edu)

Phone: 1-831-459-4250

Office: 315B Applied Sciences

Office hours: MW 2-3 (right after class)