| home | syllabus | links | problem sets | ucsc.class.bme110 |
| Problem Set | Topic | Date Due | Answer Keys |
| Sequence databases, simple sequence analysis | January 23 |
Part A, Part B
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| Dynamic programming, sequence alignment | January 30 |
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| BLAST, PSI-BLAST | February 9 | ||
| Multiple sequence alignments, HMMs, fold recognition | February 18 |
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| Orthologs, paralogs, trees | February 23 |
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| Protein structures | March 1 |
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| Structure comparison, structure prediction | March 8 | ||
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8 (cancelled)
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Genome analysis, RNA structure and genefinding | March 15 |
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